Experiment

The Experiment object links a sample with an experimental probe. The probe defines the Q values and the resolution of the individual measurements, and returns the scattering factors associated with the different materials in the sample.

For the simple case of exploring the reflectivity of new samples, this means that you must define

the purposes:

  • defining the instrument resolution
  • providing the scattering factors for materials

Because our models allow representation based on composition, it is no longer trivial to compute the reflectivity from the model. We now have to look up the effective scattering density based on the probe type and probe energy. You’ve already seen this in Subclassing Layer: the render method for the layer requires the probe to look up the material scattering factors.

Direct Calculation

Rather than using Stack <refl1d.model.Stack, Probe and class:Experiment <refl1d.experiment.Experiment, we can compute reflectivities directly with the functions in refl1d.reflectivity. These routines provide the raw calculation engines for the optical matrix formalism, converting microslab models of the sample into complex reflectivity amplitudes, and convolving the resulting reflectivity with the instrument resolution.

The following performs a complete calculation for a silicon substrate with 5 Å roughness using neutrons. The theory is sampled at intervals of 0.001, which is convolved with a 1% \(\Delta Q/Q\) resolution function to yield reflectivities at intervals of 0.01.

>>> from numpy import arange
>>> from refl1d.reflectivity import reflectivity_amplitude as reflamp
>>> from refl1d.reflectivity import convolve
>>> Qin = arange(0,0.21,0.001)
>>> w,rho,irho,sigma = zip((0,2.07,0,5),(0,0,0,0))
>>> # the last layer has no interface
>>> r = reflamp(kz=Qin/2, depth=w, rho=rho, irho=irho, sigma=sigma[:-1])
>>> Rin = (r*r.conj()).real
>>> Q = arange(0,0.2,0.01)
>>> dQ = Q*0.01 # resolution dQ/Q = 0.01
>>> R = convolve(Qin, Rin, Q, dQ)
>>> print("\n".join("Q: %.2f  R: %.5e"%(Qi,Ri) for Qi,Ri in zip(Q,R)))
Q: 0.00  R: 1.00000e+00
Q: 0.01  R: 3.11332e-02
Q: 0.02  R: 3.30684e-03
...
Q: 0.19  R: 2.10084e-07